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research Functional Genomics Comparative Genomics QTL Mapping Livestock Genome Sequencing Initiative

1991-2000

 

An ordered comparative map of the cattle and human genomes. Band M.R., J.H. Larson, M. Rebeiz, C.A. Green, D.W. Heyen, J. Donovan, R. Windish, C. Steining, P. Mahyuddin, J.E. Womack and H.A. Lewin. 2000. Genome Research 10:1359-1368.


Phylogenomic analysis of the alpha proteasome gene family from early diverging eukaryotes. Bouzat J.L., L.K. McNeil, H.M. Robertson, L.F. Solter, J. Nixon, J.E. Beever, H.R. Gaskins, G. Olsen, S. Subramaniam, M.K. Sogin and H.A. Lewin. 2000. Journal Molecular Evolution 51:532-543.


COMPASS of 47,747 cattle ESTs. Rebeiz M. and H.A. Lewin. 2000. Animal Biotechnology 11:75-241.


Comparative organization of cattle chromosome 5 revealed by COMPASS and radiation hybrid mapping. Ozawa A., M.R. Band, J.H. Larson, J. Donovan, C.A. Green, J.E. Womack and H.A. Lewin. 2000. Proceedings of the National Academy of Sciences USA 11:4150-4155.


A genome scan for quantitative trait loci affecting milk production and health traits in dairy cattle. Heyen D.W., J.I. Weller, M. Ron, M. Band, J.E. Beever, E. Feldmesser, Y. Da, G.R. Wiggans, P.M. VanRaden and H.A. Lewin. 1999. Physiological Genomics 1:165-175.


Bovine chromosome 4 workshop: consensus and comprehensive linkage maps. Casas E., W. Barendse, J.E. Beever, B.M. Burns, S.K. Davis, G. Erhardt, M. Förster, L. Gomez-Raya, E. Kalm, S.M. Kappes, H. Klungland, H.A. Lewin, S. Lien, I. Olsaker, N. Reinsch, M. Schwerin, Y. Song, J.F. Taylor, H. Thomsen, D.I. Vage, X. Wu, N. Xu and C-.C. Yeh. 1999. Animal Genetics 30:375-377.


Fine mapping of a region of variation in recombination rate on BTA23 to the D23S22-D23S23 interval using sperm typing and meiotic breakpoint analysis. Park C. and H.A. Lewin. 1999. Genomics 59:143-149.


Standardization and conversion of marker polymorphism measures. Da Y., P.M. VanRaden, J.E. Beever, M. Ron, A.A. Paszek, J. Song, G.R. Wiggans, R.Z. Ma, J.I. Weller and H.A. Lewin. 1999. Animal Biotechnology 10:25-35.


Molecular cloning, genetic mapping and developmental expression of bovine POU5F1. van Eijk M.J.T., M.A. van Rooijen, S. Modina, L. Scesci, G. Folkers, H.T.A. van Tol, M.M. Bevers, S.R. Fisher, H.A. Lewin, D. Shehu, C. Galli, C. de Vaureix, A.O. Trounson, C.L. Mummery and F. Gandolfi. 1999. Biology of Reproduction 60:1093-1103.


Phylogenetic relationships of Cheju horses to other horse breeds as determined by mtDNA D-loop sequence polymorphism. Kim K.-I., Y.-H. Yang, S.-S. Lee, C. Park, R. Ma, J.L. Bouzat and H.A. Lewin. 1999. Animal Genetics 30:102-108.


A radiation hybrid map of BTA23: identification of a chromosomal rearrangement leading to separation of the cattle MHC class II subregions. Band M., J.H. Larson, J.E. Womack and H.A. Lewin. 1998. Genomics 53: 269-275.


A new approach to the problem of multiple comparisons in the genetic dissection of complex traits. Weller J.I., J.Z. Song, D.W. Heyen, H.A. Lewin and M. Ron. 1998. Genetics 150:1699-1706.


Comparative analysis of 82 expressed sequence tags from a cattle ovary cDNA library. Ma R.Z., M.J.T. van Eijk, J.E. Beever, G. Guérin, C.L. Mummery and H.A. Lewin. 1998. Mammalian Genome 9:545-549.


Report of the First Workshop on the Genetic Map of Bovine Chromosome 1. Taylor J.F., A. Eggen, A. Aleyasin, S.M. Armitage, W. Barendse, J.E. Beever, R.A. Brenneman, B.M. Burns, S.K. Davis, K. Elo, B. Harlizius, S.M. Kappes, J.W. Keele, S.J. Kemp, B.W. Kirkpatrick, H.A. Lewin, R.Z. Ma, R.A. McGraw, D. Pomp., R.T. Stone, Y. Sugimoto, A.J. Teale, D. Vaiman, J. Vilkki, J.L. Williams, C.-C. Yeh and M.C. Zanotti. 1998. Animal Genetics 29:228-235.


BoLA-DRB3-associated resistance to persistent lymphocytosis is characterized by reduced bovine leukemia virus proviral load. Mirsky M.L., C.A. Olmstead, Y. Da and H.A. Lewin. 1998. Animal Genetics 29:245-252.


Development of a syngeneic bovine fibroblast cell line: implications for the study of bovine cytotoxic T lymphocytes. Hedge N.R., H.A. Lewin, M.J. Duggan, J.R. Stabel and S. Srikumaran. 1998. Viral Immunology 11:37-48.


Characterization of the 3' end of the gene for bovine factor XI. Robinson J.L., J.E. Beever, N. De Leeuw, H.A. Lewin, M. Gillings, J.A. Dennis and P.J. Healy. 1998. Journal of Dairy Science 81:539-543.


The ghost of genetic diversity past: historical DNA analysis of the greater Prairie Chicken. Bouzat J.L., H.A. Lewin and K.N. Paige. 1998. American Naturalist 152:1-6. (work cited in Science 277:1205, 1997)


Genetic evaluation of a demographic bottleneck in the Greater Prairie Chicken (Tympanuchus cupido). Bouzat J.L., H.H. Cheng, H.A. Lewin, R.L. Westemeier, J.D. Brawn and K.N. Paige. 1998. Conservation Biology 12:836-843.


Molecular cloning, genetic mapping and developmental expression of a bovine TGF-β type I receptor. Roelen B.A.J., M.J.T. van Eijk, M.A. van Rooijen, M.M. Bevers, J.H. Larson, H.A. Lewin and C.L. Mummery. 1997. Molecular Reproduction in Development 49:1-9.


A phylogenetic analysis of cattle DRB3 alleles with a deletion of codon 65. Mikko S., H.A. Lewin and L. Andersson. 1997. Immunogenetics 47:23-29.


BoLA class II sequences, 1996. Russell G.C., C.J. Davies, L. Andersson, S.A. Ellis, E.J. Hensen, H.A. Lewin, S. Mikko, N.E. Muggli-Cockett and J.J. van der Poel. 1997. Report of the ISAG BoLA Nomenclature Committee. Animal Genetics 28:169-180.


Nomenclature for factors of the BoLA system, 1996. Davies C.J., G.C. Russell, L. Andersson, S.A. Ellis, E.J. Hensen, H.A. Lewin, S. Mikko, N.E. Muggli-Cockett and J.J. van der Poel. 1997. Report of the ISAG BoLA Nomenclature Committee. Animal Genetics 28:159-168.


Genetic mapping of five human chromosome 4 orthologues to bovine chromosomes 6 and 17. Fisher S.R., J.E. Beever and H.A. Lewin. 1997. Animal Genetics 28:253-257.


Mapping of eight human chromosome 1 orthologs to cattle chromosomes 3 and 16. Beever J.E., S.R. Fisher, G. Guérin and H.A. Lewin. 1997. Mammalian Genome 8:533-536.


Polymorphism identification in cattle ACADM, AT3, IL10, MYOG and TSHB. Beever, J.E., S.R. Fisher and H.A. Lewin. 1997. Animal Genetics 28:373-374.


A medium density genetic linkage map of the bovine genome. Barendse W., D. Vaiman, S.J. Kemp, Y. Sugimoto, S.M. Armitage, J.L. Williams, H.S. Sun, A. Eggen, M. Agaba, S.A. Aleyasin, M. Band, M.D. Bishop, J. Buitkamp, K. Byrne, F. Collins, L. Cooper, W. Coppettiers, B. Denys, R.D. Drinkwater, K. Easterday, C. Elduque, S. Ennis, G. Erhardt, L. Ferretti, N. Flavin, Q. Gao, M. Georges, R. Gurung, B. Harlizius, G. Hawkins, J. Hetzel, T. Hirano, D. Hulme, C. Jorgensen, M. Kessler, B.W. Kirkpatrick, B. Konfortov, S. Kostia, C. Kuhn, J.A. Lenstra, H. Leveziel, H.A. Lewin, B. Leyhe, L. Lil, I. Martin Buriel, R.A. McGraw, R.J. Miller, D.E. Moody, S.S. Moore, S. Nakane, I.J. Nijman, I. Olsaker, D. Pomp, A. Rando, M. Ron, A. Shalom, A.J. Teale, U. Thieven, B.G.D. Urquhart, D.-I. Vage, A. Van de Weghe, S. Varvio, R. Velmala, J. Vilkki, R. Weikard, C. Woodside, J.E. Womack, M. Zanotti and P. Zaragoza. 1997. Mammalian Genome 8:21-28.


Genetic mapping of COL3A1 to bovine chromosome 2. Fisher S.R., J.E. Beever and H.A. Lewin. 1997. Mammalian Genome 8:76-77.


Exclusion probabilities of 22 bovine microsatellite markers in fluorescent multiplexes for semi-automated parentage testing. Heyen D.W., J.E. Beever, Y. Da, R.E. Everts, C. Green, S.R.E. Bates, J.S. Ziegle and H.A. Lewin. 1997. Animal Genetics 28:21-27.


Association of BoLA class II haplotypes with subclinical progression of bovine leukemia virus in Holstein-Friesian cattle. Zanotti M., G. Poli, W. Ponti, M. Polli, M. Rocchi, E. Bolzani, M. Longeri, S. Russo, H.A. Lewin and M.J.T. van Eijk. 1996. Animal Genetics 27:337-341.


A male linkage map of the cattle (Bos taurus) genome. Ma R.Z., J.E. Beever, Y. Da, C.A. Green, I. Russ, C. Park, D.W. Heyen, R.E. Everts, K.M. Overton, S.R. Fisher, A.J. Teale, S.J. Kemp, H.C. Hines, G. Guérin and H.A. Lewin. 1996. Journal of Heredity 87:261-271.


Report of the first workshop on the genetic map of bovine chromosome 23. Beever J.E., H.A. Lewin, W. Barendse, L. Andersson, S.M. Armitage, C.W. Beattie, B.M. Burns, S.K. Davis, S.M. Kappes, B.W. Kirkpatrick, R. Ma, R.A. McGraw, R.T. Stone and J.F. Taylor. 1996. Animal Genetics 27:69-75.


The prevalence of proviral bovine leukemia virus in peripheral blood mononuclear cells of naturally infected cows at different stages of infection. Mirsky M.L., C.A. Olmstead, Y. Da and H.A. Lewin. 1996. Journal of Virology 70:2178-2183.


Aberrant expression of immunoglobulin mRNA in bovine leukemia virus infected cattle. Teutsch M.R. and H.A. Lewin. 1996. Veterinary Immunology and Immunopathology 53:87-94.


Use of flow cytometry and RT-PCR for detecting gene expression by single cells. Gaynor E.M., M.L. Mirsky and H.A. Lewin. 1996. Biotechniques 21:286-291.


Isolation and characterization of 45 polymorphic microsatellites from the bovine genome. Ma R.Z., I. Russ, D.W. Heyen, J.E. Beever, C.A. Green and H.A. Lewin. 1995. Animal Genetics 27:43-47.


Prediction of informativeness for microsatellite markers among progeny of grandsires used for detection of economic trait loci in dairy cattle. Ron M., H.A. Lewin, Y. Da, M. Band, A. Janai, J. Blank, E. Feldmesser and J.I. Weller. 1995. Animal Genetics 26:439-441.


A panel of polymorphic bovine, ovine and caprine microsatellite markers. Kemp S.J., O. Hishida, J. Wambugu, A. Rink, M.L. Longeri, R.Z. Ma, Y. Da, H.A. Lewin, W. Barendse and A.J. Teale. 1995. Animal Genetics 26:299-306.


Genetic mapping of F13A to BTA23 by sperm typing: difference in recombination rate between bulls in the DYA-PRL interval. Park C., I. Russ, Y. Da and H.A. Lewin. 1995. Genomics 27: 113-118.


Gene-centromere mapping of bovine DYA, DRB3, and PRL using secondary oocytes and first polar bodies: evidence for four-strand double crossovers between DYA and DRB3. Jarrell V.L., H.A. Lewin, Y. Da and M.B. Wheeler. 1995. Genomics 27: 33-39.


PCR-based genotyping for characterization of SLA-DQB and SLA-DRB alleles in domestic pigs. Shia Y-C., M. Bradshaw, M.S. Rutherford, H.A. Lewin and L.B. Schook. 1995. Animal Genetics 26:91-100.


Genetic mapping of BoLA-A, CYP21A, DRB3, DYA and PRL on BTA23. van Eijk M.J.T., J.E. Beever, Y. Da, J.A. Stewart, G.E. Nicholaides, C.A. Green and H.A. Lewin. 1995. Mammalian Genome 6:151-152.


Multilocus analysis for gene-centromere mapping using first polar bodies and secondary oocytes. Da Y., V.L. Jarrell, T. Wang, R.L. Fernando, M.B. Wheeler and H.A. Lewin. 1995. Genetics 139:1091-1097.


Linkage information content and efficiency of fullsib and halfsib designs for gene mapping. Da Y. and H.A. Lewin. 1995. Theoretical and Applied Genetics 90: 699-706.


Genetic mapping of LMP2 proteasome subunit gene to the class IIb region of the BoLA complex. Shalhevet D., Y. Da, J.E. Beever, M.J.T. van Eijk, R. Ma, H.A. Lewin and H.R. Gaskins. 1995. Immunogenetics 41:44-46.


Host genetic mechanism of resistance and susceptibility to a bovine retroviral infection. Lewin H.A. 1994. Animal Biotechnology 5:183-191.


A Taq I polymorphism in the bovine blood coagulation factor XIII A subunit gene. Russ I., J.E. Beever and H.A. Lewin. 1994. Animal Genetics 25:433.


A genetic map of nine loci on bovine chromosome 2. Beever J.E., Y. Da, M. Ron and H.A. Lewin. 1994. Mammalian Genome 5:542-545.


Polymorphism of bovine MHC class II genes. Joint report of the Fifth International BoLA Workshop, Interlaken, Switzerland, 1 August 1992. Davies C.J., I. Joosten, L. Andersson, M.A. Arriens, D. Bernoco, G. Byrns, B. Bissumbhar, M.J.T. van Eijk, H. Ellegren, B. Kristensen, H.A. Lewin, A.L.G. Morgan, N.E. Muggli-Cockett, Ph.R. Nilsson, R.A. Oliver, C.A. Park, J.J. van der Poel, M. Polli, R.L. Spooner and J.A. Stewart. 1994. European Journal of Immunogenetics 21: 259-289.


Polymorphism of bovine MHC class I genes. Joint report of the Fifth International BoLA Workshop, Interlaken, Switzerland, 1 August 1992. Davies C.J., I. Joosten, D. Bernoco, M.A. Arriens, J. Bester, G. Ceriotti, S. Ellis, E.J. Hensen, H.C. Hines, P. Horin, B. Kristensen, H.A. Lewin, D. Meggiolaro, A.L.G. Morgan, M. Morita, Ph.R. Nilsson, R.A. Oliver, A. Orlova, H. sterg rd, C.A. Park, H.-J. Schuberth, M. Simon, R.L. Spooner and J.A. Stewart. 1994. European Journal Immunogenetics 21: 239-258.


The bovine B and C blood group systems are not likely to be the orthologues of human RH: an interesting twist in the comparative map. Lewin H.A., J.E. Beever, Y. Da, H.C. Hines and D.B. Faulkner. 1994. Animal Genetics 25(Suppl. 1):13-18.


Both DQB genes are expressed in a BoLA haplotype carrying a duplicated DQ region. Xu A., C. Park and H.A. Lewin. 1994. Immunogenetics 39:316-321.


Polymorphism of BoLA-DRB3 exon 2 correlates with resistance and susceptibility to persistent lymphocytosis caused by bovine leukemia virus. Xu A., M.J.T. van Eijk, C. Park and H.A. Lewin. 1993. Journal of Immunology 151:6977-6986.


Milk and fat yields decline in bovine leukemia virus-infected dairy cattle with persistent lymphocytosis. Da Y., R.D. Shanks, J.A. Stewart and H.A. Lewin. 1993. Proceedings of the National Academy of Sciences USA 90:6538-6541.


Detection of bovine leukemia virus proviral DNA in individual cells. Mirsky M.L., Y. Da and H.A. Lewin. 1993. PCR Methods and Applications 2:333-340.


Order of bovine DRB3, DYA and PRL determined by sperm typing. van Eijk M.J.T., I. Russ and H.A. Lewin. 1993. Mammalian Genome 4:113-118.


Polymorphism in exon 2 of the bovine lymphocyte antigen (BoLA)-DYA gene. van Eijk M.J.T., I. Russ, J.E. Beever and H.A. Lewin. 1992. Animal Genetics 23:476.


Restriction fragment length polymorphism at the bovine liver, bone and kidney alkaline phosphatase (ALPL) locus. Beever J.E. and H.A. Lewin. 1992. Animal Genetics 23:577.


Restriction fragment length polymorphism at the bovine Gardner-Rasheed feline sarcoma oncogene homolog (FGR) locus. Beever J.E. and H.A. Lewin. 1992. Animal Genetics 23:576.


Restriction fragment length polymorphism at the bovine phosphogluconate dehydrogenase (PGD) locus. Beever J.E. and H.A. Lewin. 1992. Animal Genetics 23:575.


Sequencing and genetic analysis of a bovine DQa cDNA clone. Xu A., K. McKenna and H.A. Lewin. 1992. Immunogenetics 37:231-234.


Extensive polymorphism of the BoLA-DRB3 gene distinguished by PCR-RFLP. van Eijk M.J.T., J.A. Stewart-Haynes and H.A. Lewin. 1992. Animal Genetics 23:483-496.


Development of persistent lymphocytosis in cattle is closely associated with DRB2. van Eijk, M.J.T., J.A. Stewart-Haynes, J.E. Beever, R.L. Fernando and H.A. Lewin. 1992. Immunogenetics 37:64-68.


A simple method for DNA extraction from leukocytes for use in PCR. Lewin H.A. and J.A. Stewart-Haynes. 1992. Biotechniques 13:522-523.


Close linkage between bovine prolactin and BoLA-DRB3 genes: genetic mapping in cattle by single sperm typing. Lewin H.A., K. Schmitt, R. Hubert, M.J.T. van Eijk and N. Arnheim. 1992. Genomics 13:44-48.


Joint Report of the Fourth International Bovine Lymphocyte Antigen (BoLA) Workshop, East Lansing, Michigan, USA, August 25, 1990. Bernoco D., H.A. Lewin, L. Andersson, M.A. Arriens, G. Byrns, S. Cwik, C.J. Davies, H.C. Hines, W. Leibold, Lie, D. Meggiolaro, R. Oliver, H. stergard, R.L. Spooner, J.A. Stewart-Haynes, A.J. Teale, J.W. Templeton and M. Zanotti. 1992. Animal Genetics 22:477-496.


RFLP analysis of SLA haplotypes in Swiss Large White and American Hampshire pigs using SLA class I and class II probes. Shia Y.-C., C. Gautschi, M.-S Ling, J.E. Beever, D.G. Mclaren, H.A. Lewin and L.B. Schook. 1991. Animal Biotechnology 2:75-91.


Molecular cloning and sequence analysis of bovine MHC DQB cDNA. Xu A., T.J. Clarke, M.R. Teutsch, L.B. Schook and H.A. Lewin. 1991. Animal Genetics 22:381-389.


HindIII RFLP at the porcine t complex polypeptide 1 (TCP1) locus. Shia, Y.-C., J.E. Beever, H.A. Lewin and L.B. Schook. 1991. Animal Genetics 22:194.

 



  Laboratory of Mammalian Genome Biology
University of Illinois at Urbana-Champaign
206 Edward R. Madigan Laboratory 
1201 West Gregory Drive 
Urbana, IL 61801




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